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||Groups (formerly known as metanodes ||UCSF, Agilent || || Completed API and single client (namedSelectionPlugin) || | ||Groups (formerly known as metanodes ||UCSF, Agilent || || Completed API and two client plugins (namedSelectionPlugin, metanodePlugin2) || |
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||Remove Deprecation Warnings ||Everyone ||ongoing ||ongoing || | |
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||Remove Deprecation Warnings ||Everyone ||ongoing ||ongoing || |
Release 2.5 Use Cases / Overall Themes
- Pathway / Annnotation
- Usability
- Navigation / Find
Timeline
Target Release Date: June 1, 2007
Release 2.5 Features
TODO
Name |
Lead Group |
Time Required |
Status |
Layout Manager / Broker |
UCSF - Scooter |
|
checked in/awaiting feedback |
Groups (formerly known as metanodes |
UCSF, Agilent |
|
Completed API and two client plugins (namedSelectionPlugin, metanodePlugin2) |
Hyperedges |
Agilent |
1-2 weeks |
finalizing documentation, testing |
Document Event Handling (preliminary work to event handling refactoring, write Doclets) |
Everyone |
|
|
["VizMapUI"] Redesign |
UCSD - Kei |
Alpha release in March |
Building mockups and cleaning backend code |
Plugin Website / Automatic plugin download |
UCSD - Peng, ISB - Sarah |
10 weeks |
Planning/Design of manager/website |
Linkout from Attribute Browser |
UCSD - Kei |
1-2 weeks |
Prototype is already there, but need to integrate it with Linkout plugin. |
Create cytoscape-helpdesk |
UCSD - Peng |
2 weeks |
|
Peformance (speed + memory) profiling |
UCSD - Mike, AMC - Piet |
3 weeks |
|
GINY Refactoring |
UCSD - Mike |
|
|
Properties / XML Config |
UCSD,UCSF - Scooter |
1 month (? Depends on the goal) |
Planning |
Cytoscape Class Cleanup |
MSKCC - Ethan |
|
|
CyAttributes Name Clashes |
MSKCC - Ethan |
|
|
Pathway Commons Connectivity |
MSKCC, Gary |
TBD based on scope/design meeting 2/15 |
Planning/Design |
Filters |
MSKCC - Ethan, UCSD - Mike |
|
|
Combining Attributes / Formulas |
MSKCC - Ethan, UCSF - Scooter, Alex |
|
|
Library Reduction / Cleanup |
ISB - Sarah |
1 week |
ongoing |
Web Services / Database Connectivity Guidelines |
ISB - Sarah, UCSF - Alex |
2 weeks (more depending on goals) |
ongong |
Usability Assessment |
Pasteur, ISB - Sarah |
ongoing |
ongoing |
Testing |
AMC - Piet, Pasteur - Tero |
|
|
Undo Manager |
AMC - Piet, UCSD - Mike |
4 weeks |
|
Interactive Layout (Bubble, Snap-To) |
UCSF - Alex, Agilent - Allan K, MSKCC - Ben |
1-2 weeks |
bubble-router mostly implemented, nearing internal release to core developers |
Layers / Annotation / UI for custom nodes |
UCSF - Alex, Agilent - Allan K, MSKCC - Ben |
TBD (requires further study of renderer) |
some initial functionality implemented, and utilized in bubble router prototype |
Papers |
Everyone |
|
|
Tutorials |
Unassigned |
|
|
Bug Fixing |
Everyone |
|
|
Remove Deprecation Warnings |
Everyone |
ongoing |
ongoing |
Completed
Name |
Lead Group |
Time Required |
Status |
Postponed
Name |
Lead Group |
Time Required |
Status |
Custom Node / Edge Graphics (MIMS) |
UCSF - Alex, Agilent - Allan K, MSKCC - Ben |
|
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