Cytoscape Wiki|
← Revision 13 as of 2007-02-05 16:31:52
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← Revision 14 as of 2007-02-06 07:17:48 →
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||Interactive Layout (Bubble, Snap-To) ||UCSF - Alex, Agilent - Allan K, MSKCC - Ben || || || ||Layers / Annotation / UI for cutsom nodes ||UCSF - Alex, Agilent - Allan K, MSKCC - Ben || || || |
||Interactive Layout (Bubble, Snap-To) ||UCSF - Alex, Agilent - Allan K, MSKCC - Ben ||1-2 weeks || bubble-router mostly implemented, nearing internal release to core developers || ||Layers / Annotation / UI for custom nodes ||UCSF - Alex, Agilent - Allan K, MSKCC - Ben || || || |
Release 2.5 Use Cases / Overall Themes
- Pathway / Annnotation
- Usability
- Navigation / Find
Timeline
Target Release Date: June 1, 2007
Release 2.5 Features
TODO
Name |
Lead Group |
Time Required |
Status |
Layout Manager / Broker |
UCSF - Scooter |
|
checked in/awaiting feedback |
Groups (formerly known as metanodes |
UCSF, Agilent |
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Hyperedges |
Aglient |
1-2 weeks |
finalizing documentation, testing |
Document Event Handling (write Doclets) |
Everyone |
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Remove Deprecation Warnings |
Everyone |
ongoing |
ongoing |
["VizMapUI"] Redesign |
UCSD - Kei |
Alpha release in March |
Building mockups |
Plugin Website / Automatic plugin download |
UCSD - Peng, ISB - Sarah |
10 weeks |
ongoing |
Linkout from Attribute Browser |
UCSD - Kei |
1-2 weeks |
Prototype is already there, but need to integrate it with Linkout plugin. |
Create cytoscape-helpdesk |
UCSD - Peng |
2 weeks |
|
Peformance (speed + memory) profiling |
UCSD, AMC - Piet |
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GINY Refactoring |
UCSD - Mike |
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Properties / XML Config |
UCSD,UCSD - Scooter |
1 month (? Depends on the goal) |
Planning |
Cytoscape Class Cleanup |
MSKCC - Ethan |
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CyAttributes Name Clashes |
MSKCC - Ethan |
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Pathway Commons Connectivity |
MSKCC, Gary |
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Filters |
MSKCC - Ethan, UCSD - Mike |
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Combining Attributes / Formulas |
MSKCC - Ethan, UCSF - Scooter, Alex |
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Library Reduction / Cleanup |
ISB - Sarah |
1 week |
ongoing |
Web Services / Database Connectivity Guidelines |
ISB - Sarah, UCSF - Alex |
2 weeks (more depending on goals) |
ongong |
Usability Assessment |
Pasteur, ISB - Sarah |
ongoing |
ongoing |
Testing |
AMC - Piet, Pasteur - Tero |
|
|
Undo Manager |
AMC - Piet, UCSD - Peng |
|
|
Interactive Layout (Bubble, Snap-To) |
UCSF - Alex, Agilent - Allan K, MSKCC - Ben |
1-2 weeks |
bubble-router mostly implemented, nearing internal release to core developers |
Layers / Annotation / UI for custom nodes |
UCSF - Alex, Agilent - Allan K, MSKCC - Ben |
|
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Papers |
Everyone |
|
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Tutorials |
Unassigned |
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Bug Fixing |
Everyone |
|
|
Completed
Name |
Lead Group |
Time Required |
Status |
Postponed
Name |
Lead Group |
Time Required |
Status |
Custom Node / Edge Graphics (MIMS) |
UCSF - Alex, Agilent - Allan K, MSKCC - Ben |
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