Cytoscape Wiki|
← Revision 1 as of 2007-01-18 18:54:19
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| [[TableOfContents]] | |
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| = Cytoscape Release 2.5 = | = Release 2.5 Use Cases / Overall Themes = |
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| '''UCSF''' | = Timeline = |
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* Layout Manager / Broker - '''Scooter''' - 2.5 * Remove Deprecation Warnings - '''Scooter''' - 2.5, ongoing * Groups (formerly known as metanodes) - '''UCSF, Agilent''' - 2.5 '''Agilent''' |
= Release 2.5 Features = |
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* Hyperedges - '''Aglient''' - 2.5 * Document Event Handling - '''Mike Creech, Allan K, Ben Gross''' (write Doclets) '''UCSD''' |
||'''Name'''||'''Lead Group'''||'''Time Required'''||'''Status''''|| ||Layout Manager / Broker||UCSF - Scooter|| || || ||Groups (formerly known as metanodes||UCSF, Agilent|| || || ||Hyperedges||Aglient|| || || ||Document Event Handling (write Doclets)||Everyone (Mike Creech, Allan K, Ben Gross|| || || ||Remove Deprecation Warnings||Everyone||ongoing||ongoing|| ||Vizmap UI Redesign||UCSD - Kei|| || || ||Plugin Website / Automatic plugin download||UCSD - Peng, ISB - Sarah|| || || ||Linkout from Attribute Browser||UCSD|| || || ||Create cytoscape-helpdesk||UCSD - Peng|| || || ||Peformance (speed + memory) profiling||UCSD, AMC - Piet|| || || ||GINY Refactoring||UCSD - Mike|| || || ||Properties / XML Config||UCSD,UCSD - Scooter|| || || ||Cytoscape Class Cleanup||MSKCC - Ethan|| || || ||CyAttributes Name Clashes||MSKCC - Ethan|| || || ||Pathway Commons Connectivity||MSKCC, Gary|| || || ||Filters||MSKCC - Ethan, UCSD - Mike|| || || ||Combining Attributes / Formulas||MSKCC - Ethan, UCSF - Scooter, Alex|| || || ||Library Reduction / Cleanup||ISB - Sarah|| || || ||Web Services / Database Connectivity Guidelines||ISB - Sarah, UCSF - Alex|| || || ||Usability Assessment||Pasteur, ISB - Sarah|| || || ||Testing||AMC - Piet, Pasteur - Tero|| || || ||Undo Manager||AMC - Piet, UCSD - Peng|| || || ||Interactive Layout (Bubble, Snap-To)||UCSF - Alex, Agilent - Allan K, MSKCC - Ben|| || || ||Layers / Annotation / UI for cutsom nodes||UCSF - Alex, Agilent - Allan K, MSKCC - Ben|| || || ||Papers||Everyone|| || || ||Tutorials||Unassigned|| || || ||Bug Fixing||Everyone|| || || |
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* Vizmap Redesign UI - '''UCSD''' - 2.5 '''Kei''' * Linkout from Attribute Browser - '''Kei''' - 2.5 * Plugin Website - '''UCSD''' - 2.5+ '''Peng''' * Memory Mgt - '''Mike Smoot''' - 2.5 * GINY Refactoring - '''Chief Architect - ''Mike Smoot''''' - beyond * Properties / XML Config - '''Kei, Scooter''' - 2.5+ * Automatic Plugin Import - '''Peng, Sarah''' - 2.5 * Vizmap API - '''Mike Smoot, Sarah''' - 2.6 '''MSKCC''' |
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* Cytoscape Calss Cleanup - '''Ethan''' - 2.5 * CyAttributes Name Clashes - '''Ethan''' - 2.5 * Pathway Commons Connectivity - '''MSKCC, Gary''' - (website 2.5) * Filters - '''Ethan, Mike Smoot''' - 2.5 * Combining Attributes / Formulas - '''Ethan, Scooter, Alex''' - 2.6 '''ISB''' * Library Reduction / Cleanup - '''Sarah''' - 2.5 * Web Services / Database Connectivity Guidelines - '''Sarah, Alex''' - 2.5 '''Pasteur''' * Usability Assessment - '''Pasteur, Sarah, M. X''' - ongoing '''Piet, AMC''' * Performance Profiling - '''Piet''' - ongoing * Testing - '''Piet, Tero''' - 2.5 * Undo Manager - '''Piet, Peng''' - ongoing '''Collective Leadership''' * Interactive Layout (Bubble, Snap-To) - '''Alex, Allan K, Ben''' - 2.5 * Layers / Annotation / UI for cutsom nodes - '''Alex, Allan K, Ben''' - 2.5 * Custom Node / Edge Graphics - '''MIM?, UCSF, Allan K, Ben''' - 2.6 * Papers - '''All''' - ongoing '''Unassigned''' * Tutorials - '''Outreach Officer''' * Website Content Update - '''Webmaster''' * generate list of content that requires update to help distribute task * create cyto-helpdesk and advertise it |
== Postponed features == ||'''Name'''||'''Lead Group'''||'''Time Required'''||'''Status''''|| ||Custom Node / Edge Graphics (MIMS)||UCSF - Alex, Agilent - Allan K, MSKCC - Ben|| || || |
Release 2.5 Use Cases / Overall Themes
Timeline
Release 2.5 Features
Name |
Lead Group |
Time Required |
Status' |
Layout Manager / Broker |
UCSF - Scooter |
|
|
Groups (formerly known as metanodes |
UCSF, Agilent |
|
|
Hyperedges |
Aglient |
|
|
Document Event Handling (write Doclets) |
Everyone (Mike Creech, Allan K, Ben Gross |
|
|
Remove Deprecation Warnings |
Everyone |
ongoing |
ongoing |
Vizmap UI Redesign |
UCSD - Kei |
|
|
Plugin Website / Automatic plugin download |
UCSD - Peng, ISB - Sarah |
|
|
Linkout from Attribute Browser |
UCSD |
|
|
Create cytoscape-helpdesk |
UCSD - Peng |
|
|
Peformance (speed + memory) profiling |
UCSD, AMC - Piet |
|
|
GINY Refactoring |
UCSD - Mike |
|
|
Properties / XML Config |
UCSD,UCSD - Scooter |
|
|
Cytoscape Class Cleanup |
MSKCC - Ethan |
|
|
CyAttributes Name Clashes |
MSKCC - Ethan |
|
|
Pathway Commons Connectivity |
MSKCC, Gary |
|
|
Filters |
MSKCC - Ethan, UCSD - Mike |
|
|
Combining Attributes / Formulas |
MSKCC - Ethan, UCSF - Scooter, Alex |
|
|
Library Reduction / Cleanup |
ISB - Sarah |
|
|
Web Services / Database Connectivity Guidelines |
ISB - Sarah, UCSF - Alex |
|
|
Usability Assessment |
Pasteur, ISB - Sarah |
|
|
Testing |
AMC - Piet, Pasteur - Tero |
|
|
Undo Manager |
AMC - Piet, UCSD - Peng |
|
|
Interactive Layout (Bubble, Snap-To) |
UCSF - Alex, Agilent - Allan K, MSKCC - Ben |
|
|
Layers / Annotation / UI for cutsom nodes |
UCSF - Alex, Agilent - Allan K, MSKCC - Ben |
|
|
Papers |
Everyone |
|
|
Tutorials |
Unassigned |
|
|
Bug Fixing |
Everyone |
|
|
Postponed features
Name |
Lead Group |
Time Required |
Status' |
Custom Node / Edge Graphics (MIMS) |
UCSF - Alex, Agilent - Allan K, MSKCC - Ben |
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