Cytoscape Wiki|
← Revision 1 as of 2005-12-05 19:23:04 →
Size: 541
Comment:
|
Size: 972
Comment:
|
| Deletions are marked like this. | Additions are marked like this. |
| Line 1: | Line 1: |
|
= Cytoscape 2.4 and Beyond = |
|
| Line 4: | Line 2: |
|
* MetaNodes, Phase 2 * Attribute Based Layout * Multi-colored nodes * Better hide/show for edges/ nodes * Real-time vizmapper update * KEGG Reader / Reaction node + editor * Interactive Slider Widget * Visual Legend * Standardize context menus for nodes/edges * Network specific node and edge attributes |
* Meta Nodes, Phase 2 * Attribute Based Layout * Multi-colored nodes * Better hide/show for edges/ nodes * Real-time vizmapper update * KEGG Reader / Reaction node + editor * Expression Matrix reader for more data formats (MIAME) * Interactive Slider Widget * Visual Legend * Standardize context menus for nodes/edges * Network specific node and edge attributes * Generic Preference System and inteligent UI for the new preference data structure * Tree Object viewer in Browser (For GO data) * Background Task support (for compressing session file) * Headless mode, Phase 2 (Web Service?) |
| Line 16: | Line 19: |
|
* New GraphObject class; for nodes/edges * Formalize what goes in the core * Improving / Refactoring Event Model |
* New {{{GraphObject}}} class; for nodes/edges * Formalize what goes in the core * Improving / Refactoring Event Model * Remove the "GO Level" idea from Gene Ontology Server * Remove legacy code from GO Server * Expression Matrix must use CyAttribute instead of redundant data structure. |
Features
- Meta Nodes, Phase 2
- Attribute Based Layout
- Multi-colored nodes
- Better hide/show for edges/ nodes
- Real-time vizmapper update
- KEGG Reader / Reaction node + editor
- Expression Matrix reader for more data formats (MIAME)
- Interactive Slider Widget
- Visual Legend
- Standardize context menus for nodes/edges
- Network specific node and edge attributes
- Generic Preference System and inteligent UI for the new preference data structure
- Tree Object viewer in Browser (For GO data)
- Background Task support (for compressing session file)
- Headless mode, Phase 2 (Web Service?)
Refactoring / Design Issues
New GraphObject class; for nodes/edges
- Formalize what goes in the core
- Improving / Refactoring Event Model
- Remove the "GO Level" idea from Gene Ontology Server
- Remove legacy code from GO Server
Expression Matrix must use CyAttribute instead of redundant data structure.