Cytoscape Wiki|
← Revision 10 as of 2006-01-12 17:37:28
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← Revision 11 as of 2006-01-12 17:39:32 →
Size: 1676
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| Deletions are marked like this. | Additions are marked like this. |
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| link attribute browser to network view (Kei) |
* link attribute browser to network view (Kei) * Meta-node compatible browser window (expand/collapse) (Kei) |
Use cases addressed:
- First steps towards drawing pathways / metabolic networks.
- Support for large networks
- Key Usability Issues
- Save State, Undo
- Viz Mapper / Filters Specific Issues
New Features:
- New rendering engine; lots of plugin dependencies
- (Nerius, Allan as consultant) Also includes Layout algorithms for large networks
- Meta-Nodes; Phase I
- (Iliana, Allan, Melissa, Aditya, Alex Pico, Scooter)
- Saving Project State (["Save current session as XML file"]) (Kei, Iliana); Depends on Meta-Nodes
- Undo Manager (Allan w/ help from friends)
- Attribute browser
- link attribute browser to network view (Kei)
- Meta-node compatible browser window (expand/collapse) (Kei)
- New, improved Cytoscape Tutorials (Melissa)
- Graph Merge, moved to core (already a plugin) (Ryan, UCSD)
- [6. Clean-up Viz Mapper UI; make friendlier; move to cytopanels] [Mike S, Allan, (possibly Alex?)]
- [7. Clean-up Filter UI][Mike S, Allan, (possibly Alex?)]
- [8. ID Mapping Services, Phase I] [Optional?] (Gary)
Refactoring / Design Issues:
Node id issue – creation of a default “label” CyAttribute (Ben)
- New documentation options; docbook, wiki, etc. (Gary, Mike)
- Take care of delete/hide/remove situation (Allan, in conjunction with Cytoscape Editor)
- Flagging/selection of nodes/edges (Iliana)
Misc. Small Items
- Ability to rename networks (Brad K at UCSD)
- Script to update source license
- Generic Linkout Pop-up Menu (Doron B, MSKCC)
- Re-organize save/load/import/export menu items (["New File Menu"]) (Kei)