Presenter: Maital Ashkenazi, Robert H. Smith Institute of Plant Sciences and Genetics in Agriculture, Hebrew University of Jerusalem, Rehovot, Israel
Title: Cytoscape ESP: simple search of complex biological networks
Abstract:
Cytoscape enhanced search plugin (ESP) enables searching complex biological networks on multiple attribute fields using logical operators and wildcards. Queries use an intuitive syntax and simple search line interface. ESP complements existing search functions in the Cytoscape network visualization and analysis software, allowing users to easily identify nodes, edges and subgraphs of interest, even for very large networks.
References:
- Ashkenazi M, Bader GD, Kuchinsky A, Moshelion M and States DJ. Cytoscape ESP: simple search of complex biological networks. Bioinformatics 2008. 24: 1465-1466
http://conklinwolf.ucsf.edu/genmappwiki/Google_Summer_of_Code_2007/Maital
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