Differences between revisions 10 and 40 (spanning 30 versions)

Cytoscape Developer Retreat 2006

San Francisco - October 9th - 14th, 2006 [http://www.cgl.ucsf.edu/cgi-bin/surveyCGI.py?../datadocs/Workshops/CytoscapeRetreat/wsReg.xml Register Now!]

The 4th Annual Cytoscape Retreat will be held October 11th - 13th, 2006 (Wed-Fri) at UCSF Mission Bay Campus in San Francisco. The retreat will be preceded by a 2-day Hackathon on the 9th and 10th. And, if you can stay another day, there will be recreational activities organized for Saturday the 14th.

Cytoscape is jointly developed by the groups of Benno Schwikowski (Pasteur Institute, Paris), Trey Ideker (University of California San Diego), Chris Sander (Memorial Sloan-Kettering Cancer Center), Lee Hood (Institute of Systems Biology, Seattle), and Annette Adler (Agilent Technologies, Santa Clara, CA). This year the retreat will be co-hosted by two new contributor groups of Tom Ferrin (UCSF Computer Graphics Laboratory) and Bruce Conklin (Gladstone/UCSF, GenMAPP).

The meeting will mainly be informal and technically focused with all major Cytoscape team members gathered together to set new directions for Cytoscape, plan new features and collaboratively work on code. Cytoscape-related presentations by invitees are welcome. Social activities around the meeting are also scheduled. This is a great chance to influence the development direction of Cytoscape.

We've added a public symposium this year to take advantage of the large number of institutions in the Bay Area with a significant interest in systems biology and the network visualization of biological data. Our goal is to invite presentations to provide attendees with an overview of Cytoscape as a tool and (more importantly) some of the areas of science that it is being applied to. We will be forming a "program committee" in the next couple of weeks, so if you have any great ideas, please send e-mail to [mailto:apico@gladstone.ucsf.edu Alex Pico] or [mailto:scooter@cgl.ucsf.edu Scooter Morris].

Preliminary Schedule

MON October 9th	Gladstone Conference Rooms A & B
12:00PM-5:00PM	[:/Hackathon:Hackathon]
TUE October 10th	Gladstone Conference Rooms C & D (excluding 11:30-1:30)
9:00AM-5:00PM	[:/Hackathon:Hackathon]
WED October 11th	Gladstone Auditorium
Public Symposium	Network-Based Approaches to Biological Data Integration and Analysis
10:00AM-10:15AM	Perspective by Guy Warner (Unilever, UK)
10:15AM-11:00AM	Patricia Babbitt (QB3/UCSF, San Francisco) BR"Network Analysis Reveals New Relationships among Divergent Proteins Missed by Tree-Based Approaches"
11:00AM-11:45PM	Gary Bader (University of Toronto)BR"BioPAX, cPath, and PDZ-based Protein Interaction Prediction"
11:45PM-12:45PM	Lunch Break - catered by Moffitt
12:45PM-1:30PM	Mirit Aladjem (National Cancer Inst, NIH)BR "Molecular Interaction Maps of Biological Signalling Networks"
1:30PM-2:15PM	Ilya Shmulevich (ISB, Seattle)BR"Data Integration and Genetic Network Modeling"
2:15PM-2:30PM	Break - coffee and light snacks
2:30PM-3:15PM	Benno Schwikowski (Institut Pasteur, Paris)BR"Mass Spec Informatics: Towards Dense Protein Expression Networks"
3:15PM-4:00PM	Trey Ideker (UCSD, San Diego)BR"Protein Network Comparative Genomics"

>4:00PM	[:/Hackathon:Hackathon Extension]
THU October 12th	Genentech Hall Auditorium
9:00AM	Introductory Remarks and Summary of Hackathon
9:30AM	Cytoscape Process Brainstorm
11:00AM	Group Discussion on Major Development Tasks
12:00PM	BBQ Lunch on the Quad, plus recess
2:00PM	The Tao of Cytoscape: Overview
2:30PM	[:/Plugins:Plugin & Usage Expo] (part I)
3:30PM	Coffee Break
3:45PM	[:/Plugins:Plugin & Usage Expo] (part II)
6:00PM	Conference Dinner - TBA
FRI October 13th	Genentech Hall - Room N114
9:00AM	Organize Major Development Tasks and Breakout
12:30PM	Working Lunch and Breakout Groups Report
1:30PM	Cytoscape SAB and Board meeting
1:30PM	concurrent Cytoscape Users Meeting
2:30PM	Finalize Road Map and Summarize Board Issues
5:30PM	Dinner on own
>5:30PM	Possible party at de Young Museum http://www.thinker.org/deyoung/calendar/day.asp?day=10/13/2006
SAT October 14th	In and Around San Francisco
Nature Tour	AM Hiking SF Coastal Trail to Land's End trail with Bruce Conklin http://www.josephstubbscreations.com/Home2/sf/sfparks/lincoln/lincoln.html
Urban Tour	AM Touring the historic Mission District murals with Allan Kuchinsky: http://www.precitaeyes.org/tours.html
Aqua Tour	AM Swimming in the Bay with Scooter Morris
Post-Tour Picnic	Afternoon Gathering at Crissy Fields, warming hut area

Campus & Conference Rooms

University of California San Francisco, UCSF, Mission Bay Campus: http://pub.ucsf.edu/missionbay/ BRJ. David Gladstone Institutes, Mission Bay: http://www.gladstone.ucsf.edu/gladstone/site/missionbay/ BRGenentech Hall - N114: http://student.ucsf.edu/classrooms/classrooms/GEN%20-N114.html BRGenentech Hall Auditorium: http://student.ucsf.edu/classrooms/classrooms/GenentechHallAuditorium.html BRGladstone Auditroium: attachment:Gladstone_Auditorium

Hackathon

October 9 and 10th, 2006, (Mon-Tues) at Mission Bay, UCSF, developers will have the opportunity to play with code pre-meeting. If you are interested in taking part in the Hackathon then be sure to plan accordingly (i.e., 2-days earlier) and indicate your interest in your registration. Find more information on Hackathon topics [:CytoscapeRetreat2006/Hackathon:here].

Registration

This is a free event. Please use our online registration system: [http://www.cgl.ucsf.edu/cgi-bin/surveyCGI.py?../datadocs/Workshops/CytoscapeRetreat/wsReg.xml Register Now!] BRIf you have any problems email [mailto:scooter@cgl.ucsf.edu Scooter Morris] or [mailto:apico@gladstone.ucsf.edu Alex Pico].

Location

Mission Bay Campus University of California San Francisco 600 16th St. San Francisco, CA 94158

http://pub.ucsf.edu/missionbay/

Hotel Suggestions

October is a big conference month in San Francisco. We highly recommend making your reservations ASAP! Try hotels.com or check out these options below:

$ [http://www.thepowellhotel.com/ The Powell Hotel] --> [http://maps.google.com/maps?f=q&hl=en&q=28+Cyril+Magnin+St,+San+Francisco,+CA map]
- "Official" Cytoscape Developer's Pick!
- Conveniently located at the Powell BART station, 1 block from the UCSF shuttle stop servicing Mission Bay
- Decent sized rooms, simply decorated
- Cafe Powell is located in the lobby
- Free wireless in all rooms
$ [http://www.hotelmarktwain.com/ Hotel Mark Twain] --> [http://maps.google.com/maps?f=q&hl=en&q=345+Taylor+St,+San+Francisco,+CA map]
- Located 4 blocks from the UCSF shuttle stop servicing Mission Bay
- Small but warmly decorated rooms, lobby, bar
- Popular Sultan Indian Restaurant in the lobby
- Exercise room
- Wireless access for $9.95 per 24-hour period
$ [http://www.hotelastoria-sf.com/ Hotel Astoria] - [http://maps.google.com/maps?f=q&hl=en&q=510+Bush+St,+San+Francisco,+CA map]
- Located 3 blocks from the UCSF shuttle stop servicing Mission Bay
- Located at the famous gates of Chinatown!
- Decent sized rooms, not really decorated
- Continental breakfast included
- No wireless available
$ [http://www.jdvhospitality.com/hotels/hotel/248 Hotel Carlton] - [http://maps.google.com/maps?f=q&hl=en&q=1075+Sutter+St,+San+Francisco,+CA map]
- Not conveniently located in the Tenderloin district (think, sketchy)
- Transportation: 47 bus on Van Ness to CalTrans Station, then UCSF shuttle service to Mission Bay
- Beautiful, large rooms and lobby - very nice
- Internet access in some public areas; pay for room access
$$ [http://www.cartwrighthotel.com/ Cartwright Hotel] - [http://maps.google.com/maps?f=q&hl=en&q=524+Sutter+St,+San+Francisco,+CA map]
- Great neighborhood, just 5 blocks from UCSF shuttle stop servicing Mission Bay
- Very nice rooms
$$$ [http://www.hotelpalomar.com/ Hotel Palomar] - [http://maps.google.com/maps?f=q&hl=en&q=12+fourth+St,+San+Francisco,+CA map]
- Located 1 block from UCSF shuttle stop servicing Mission Bay
- Very, very nice rooms

Travel

San Francisco is served by three airports: Sacramento International (SMF), Oakland (OAK), and San Francisco International (SFO). We recommend San Francisco International Airport (SFO), as it is easily accessible to the city, and has numerous shuttles, taxis and car services that serve all of its terminals. Your San Francisco hotel may be able to provide complimentary shuttle service to and from the airport. Car rentals are also available at the airport, with complimentary shuttle service to their rental facilities.

For more information regarding San Francisco International Airport, including maps of its terminals, visit their website: http://www.flysfo.com/

Transportation

A number of shuttle services provide transportation to and from the airport. Any of the following agencies provide shuttle service that is easily accessible from any airport terminal, or hotel in San Francisco.

Public transportation, (Muni and BART), is easily accessible from the airport to anywhere within the city.

http://www.bart.gov/guide/airport/sfo.asp

Airport Shuttles:

Super Shuttle Service: http://www.supershuttle.com/htm/cities/sfo.htm
Additional links to other available private and public transportation and shuttles : http://www.sftravel.com/shutl.html

Taxi Services- From the airport, and within San Francisco: http://www.zpub.com/sf/zsf-taxi.html *Fare from SFO to the city will range from $35-50

Public transportation services in San Francisco, including fares, routes, and schedules: Transit 511 Weblink: http://transit.511.org/index.asp

UCSF Mission Bay Shuttle Service - Free Service! UCSF provides free shuttle service from to and from all of its campuses throughout San Francisco, and public transportation. For more information and schedules, vist the weblink to the UCSF transportation website: http://www.campuslifeservices.ucsf.edu/transportation/shuttles/timetables/default.php

San Francisco Tourism

San Francisco boasts a rich multi-cultural history, and is a beautiful city with many local and area attractions that appeal to just about any type of traveler. While you are here, be sure to take in a few sights, and experience this unique city, or perhaps some of the beautiful attractions nearby, including Sausalito, Muir Woods, California wine country, or Alcatraz. Included below are some useful links to help you plan your visit to many of the local attractions. We hope you enjoy your visit to our great city!

http://onlyinsanfrancisco.com/ A full service guide and a good starting point for any visitor to San Francisco; includes restaurant listings, local events and links to tours and points of interest throughout the city.
http://www.buysanfranciscotours.com/ A useful link for checking into sightseeing and adventure tours available within the city of San Francisco, including cable car and trolley tours, as well as tours to Alcatraz, Muir Woods, and beautiful California wine country.
http://www.sfcablecar.com/ Your guide for planning a ride on one of San Francisco's famed historic cable cars. Includes routes and rates.
http://www.sfzoo.org/ A link to our zoo, located within the San Francisco city limits.
http://www.sfmission.com/entertain/webguide.htm A useful link for information and links to museums in San Francisco, including the San Francisco Museum of Modern Art and the DeYoung Museum.
http://www.pier39.com/Media/MediaKit/profile.htm - official website for San Francisco's famous Pier 39 and Fisherman's Wharf - Famed Ghiradelli square is just steps away.
http://www.ghiradellisq.com - Official website to this historic landmark, including its famous chocolate shop and specialty stores and restaurants.

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+Additions are marked like this.
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-'''San Francisco - October 9th - 14th, 2006'''
+~+ '''San Francisco - October 9th - 14th, 2006''' [http://www.cgl.ucsf.edu/cgi-bin/surveyCGI.py?../datadocs/Workshops/CytoscapeRetreat/wsReg.xml Register Now!]
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-||<rowstyle="background-color:#FFEEAA;">'''MON October 9th'''||Gladstone Conference Rooms||

||9:00AM-5:00PM||[:/Hackathon:Hackathon]||

||<rowstyle="background-color:#FFEEAA;">'''TUE October 10th'''||Gladstone Conference Rooms||

||9:00AM-5:00PM||[:/Hackathon:Hackathon]||

||<rowstyle="background-color:#FFEEAA;">'''WED October 11th'''||Gladstone Auditorium||

||10:00AM-4:00PM||Public Symposium||

|| ||Trey Ideker (UCSD, San Diego)||

|| ||Gary Bader (University of Toronto)[[BR]]''"BioPAX, cPath, and PDZ-based Protein Interaction Prediction"''||

|| ||Guy Warner (Unilever, UK)||

|| ||Ilya Schmulevich (ISB, Seattle)||

|| ||Benno Schwikowski (Institut Pasteur, Paris)||

|| ||TBA||

||<rowstyle="background-color:#FFEEAA;">'''THU October 12th'''||Genentech Hall Auditorium||

||9:00AM||Introductory Remarks and Summary of Hackathon||

||9:30AM||Cytoscape Process Brainstorm||

||11:00AM||Group Discussion on Major Development Tasks||

||12:00PM||BBQ Lunch on the Quad, plus recess||

||2:00PM||The Tao of Cytoscape: Overview||

||2:30PM||Plug-in & Usage Expo (part I)||

||3:30PM||Coffee Break||

||3:45PM||Plug-in & Usage Expo (part II)||

||6:00PM||Conference Dinner  - TBA||

||<rowstyle="background-color:#FFEEAA;">'''FRI October 13th'''||Genentech Hall - Room N114||

||9:00AM||Discussion of Organizational and Funding Issues||

||10:30AM||Organize Major Development Tasks and Breakout||

||12:30PM||Lunch Breakout Groups Report||

||1:30PM||Cytoscape Users Meeting||

||2:30PM||Finalize Road Map and Elect new Core Developers||

||5:30PM||Dinner on own||

||<rowstyle="background-color:#FFEEAA;">'''SAT October 14th'''||In and Around San Francisco||

||Nature Tour||Hiking the Land's End trail with Bruce Conklin||

||Urban Tour||Discovering the historic/artistic murals with Allan Kuchinsky||

||Aqua Tour||Swimming in the Bay with Scooter Morris||
+||<rowbgcolor="#ffeeaa">'''MON October 9th''' ||Gladstone Conference Rooms A & B||

||12:00PM-5:00PM ||[:/Hackathon:Hackathon]||

||<rowbgcolor="#ffeeaa">'''TUE October 10th''' ||Gladstone Conference Rooms C & D (excluding 11:30-1:30)||

||9:00AM-5:00PM ||[:/Hackathon:Hackathon]||

||<rowbgcolor="#ffeeaa">'''WED October 11th''' ||Gladstone Auditorium ||

||Public Symposium||''Network-Based Approaches to Biological Data Integration and Analysis'' ||

||10:00AM-10:15AM||Perspective by Guy Warner (Unilever, UK)||

||10:15AM-11:00AM||Patricia Babbitt (QB3/UCSF, San Francisco) [[BR]]''"Network Analysis Reveals New Relationships among Divergent Proteins Missed by Tree-Based Approaches"''||

||11:00AM-11:45PM||Gary Bader (University of Toronto)[[BR]]''"BioPAX, cPath, and PDZ-based Protein Interaction Prediction"'' ||

||11:45PM-12:45PM||Lunch Break - catered by Moffitt||

||12:45PM-1:30PM||Mirit Aladjem (National Cancer Inst, NIH)[[BR]] ''"Molecular Interaction Maps of Biological Signalling Networks"''||

||1:30PM-2:15PM||Ilya Shmulevich (ISB, Seattle)[[BR]]''"Data Integration and Genetic Network Modeling"'' ||

||2:15PM-2:30PM||Break - coffee and light snacks||

||2:30PM-3:15PM||Benno Schwikowski (Institut Pasteur, Paris)[[BR]]''"Mass Spec Informatics: Towards Dense Protein Expression Networks"''||

||3:15PM-4:00PM||Trey Ideker (UCSD, San Diego)[[BR]]''"Protein Network Comparative Genomics"''||

|| ||

||>4:00PM ||[:/Hackathon:Hackathon Extension] ||

||<rowbgcolor="#ffeeaa">'''THU October 12th''' ||Genentech Hall Auditorium ||

||9:00AM ||Introductory Remarks and Summary of Hackathon ||

||9:30AM ||Cytoscape Process Brainstorm ||

||11:00AM ||Group Discussion on Major Development Tasks ||

||12:00PM ||BBQ Lunch on the Quad, plus recess ||

||2:00PM ||The Tao of Cytoscape: Overview ||

||2:30PM ||[:/Plugins:Plugin & Usage Expo] (part I) ||

||3:30PM ||Coffee Break ||

||3:45PM ||[:/Plugins:Plugin & Usage Expo] (part II) ||

||6:00PM ||Conference Dinner  - TBA ||

||<rowbgcolor="#ffeeaa">'''FRI October 13th''' ||Genentech Hall - Room N114 ||

||9:00AM ||Organize Major Development Tasks and Breakout ||

||12:30PM ||Working Lunch and Breakout Groups Report ||

||''1:30PM'' ||Cytoscape SAB and Board meeting||

||''1:30PM'' ||''concurrent'' Cytoscape Users Meeting||

||2:30PM ||Finalize Road Map and Summarize Board Issues||

||5:30PM ||Dinner on own ||

||>5:30PM ||Possible party at de Young Museum http://www.thinker.org/deyoung/calendar/day.asp?day=10/13/2006||

||<rowbgcolor="#ffeeaa">'''SAT October 14th''' ||In and Around San Francisco ||

||Nature Tour ||AM Hiking SF Coastal Trail to Land's End trail with Bruce Conklin http://www.josephstubbscreations.com/Home2/sf/sfparks/lincoln/lincoln.html||

||Urban Tour ||AM Touring the historic Mission District murals with Allan Kuchinsky: http://www.precitaeyes.org/tours.html ||

||Aqua Tour ||AM Swimming in the Bay with Scooter Morris ||

||Post-Tour Picnic ||Afternoon Gathering at Crissy Fields, warming hut area ||
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+Line 55:
-University of California San Francisco, UCSF, Mission Bay Campus: http://pub.ucsf.edu/missionbay/

[[BR]]J. David Gladstone Institutes, Mission Bay: http://www.gladstone.ucsf.edu/gladstone/site/missionbay/

[[BR]]Genentech Hall - N114: http://student.ucsf.edu/classrooms/classrooms/GEN%20-N114.html

[[BR]]Genentech Hall Auditorium: http://student.ucsf.edu/classrooms/classrooms/GenentechHallAuditorium.html

[[BR]]Gladstone Auditroium: attachment:Gladstone_Auditorium
+University of California San Francisco, UCSF, Mission Bay Campus: http://pub.ucsf.edu/missionbay/ [[BR]]J. David Gladstone Institutes, Mission Bay: http://www.gladstone.ucsf.edu/gladstone/site/missionbay/ [[BR]]Genentech Hall - N114: http://student.ucsf.edu/classrooms/classrooms/GEN%20-N114.html [[BR]]Genentech Hall Auditorium: http://student.ucsf.edu/classrooms/classrooms/GenentechHallAuditorium.html [[BR]]Gladstone Auditroium: attachment:Gladstone_Auditorium
-Line 57:
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-October 9 and 10th, 2006, (Mon-Tues) at Mission Bay, UCSF, developers will have the opportunity to play with code pre-meeting.  If you are interested in taking part in the Hackathon then be sure to plan accordingly (i.e., 2-days earlier) and indicate your interest in your registration.  Find more information on Hackathon topics [:/Hackathon:here].
+October 9 and 10th, 2006, (Mon-Tues) at Mission Bay, UCSF, developers will have the opportunity to play with code pre-meeting.  If you are interested in taking part in the Hackathon then be sure to plan accordingly (i.e., 2-days earlier) and indicate your interest in your registration.  Find more information on Hackathon topics [:CytoscapeRetreat2006/Hackathon:here].
 Line 61:
-This is a free event.  Please use our online registration system:  

[http://www.cgl.ucsf.edu/cgi-bin/surveyCGI.py?../datadocs/Workshops/CytoscapeRetreat/wsReg.xml Register Now!]

[[BR]]If you have any problems email [mailto:scooter@cgl.ucsf.edu Scooter Morris] or [mailto:apico@gladstone.ucsf.edu Alex Pico].
+This is a free event.  Please use our online registration system:   [http://www.cgl.ucsf.edu/cgi-bin/surveyCGI.py?../datadocs/Workshops/CytoscapeRetreat/wsReg.xml Register Now!] [[BR]]If you have any problems email [mailto:scooter@cgl.ucsf.edu Scooter Morris] or [mailto:apico@gladstone.ucsf.edu Alex Pico].
-Line 66:
+Line 64:
-Mission Bay Campus

University of California San Francisco

600 16th St.

San Francisco, CA 94158
+Mission Bay Campus University of California San Francisco 600 16th St. San Francisco, CA 94158
-Line 77:
+Line 72:
-   * Conveniently located at the Powell BART station, 1 block from the UCSF shuttle stop servicing Mission Bay

   * Decent sized rooms, plainly decorated

   * Cafe Powell is located in the lobby

   * Free wireless in all rooms

   * ''"Official" Cytoscape Developer's Pick!''
+  * ''"Official" Cytoscape Developer's Pick!''

  * Conveniently located at the Powell BART station, 1 block from the UCSF shuttle stop servicing Mission Bay

  * Decent sized rooms, simply decorated

  * Cafe Powell is located in the lobby

  * Free wireless in all rooms
-Line 83:
+Line 78:
-   * Located 4 blocks from the UCSF shuttle stop servicing Mission Bay

   * Small but warmly decorated rooms, lobby, bar

   * Popular Sultan Indian Restaurant in the lobby

   * Exercise room

   * Wireless access for $9.95 per 24-hour period
+  * Located 4 blocks from the UCSF shuttle stop servicing Mission Bay

  * Small but warmly decorated rooms, lobby, bar

  * Popular Sultan Indian Restaurant in the lobby

  * Exercise room

  * Wireless access for $9.95 per 24-hour period
-Line 89:
+Line 84:
-   * Located 3 blocks from the UCSF shuttle stop servicing Mission Bay

   * Located at the famous gates of Chinatown!

   * Decent sized rooms, not really decorated

   * Continental breakfast included

   * No wireless available
+  * Located 3 blocks from the UCSF shuttle stop servicing Mission Bay

  * Located at the famous gates of Chinatown!

  * Decent sized rooms, not really decorated

  * Continental breakfast included

  * No wireless available
-Line 95:
+Line 90:
-   * ''Not'' conveniently located in the Tenderloin district (think, sketchy)

   * Transportation: 47 bus on Van Ness to CalTrans Station, then UCSF shuttle service to Mission Bay

   * Beautiful, large rooms and lobby - very nice

   * Internet access in some public areas; pay for room access
+  * ''Not'' conveniently located in the Tenderloin district (think, sketchy)

  * Transportation: 47 bus on Van Ness to CalTrans Station, then UCSF shuttle service to Mission Bay

  * Beautiful, large rooms and lobby - very nice

  * Internet access in some public areas; pay for room access
-Line 100:
+Line 95:
-   * Great neighborhood, just 5 blocks from UCSF shuttle stop servicing Mission Bay

   * Very nice rooms
+  * Great neighborhood, just 5 blocks from UCSF shuttle stop servicing Mission Bay

  * Very nice rooms
-Line 103:
+Line 98:
-   * Located 1 block from UCSF shuttle stop servicing Mission Bay

   * Very, very nice rooms
+  * Located 1 block from UCSF shuttle stop servicing Mission Bay

  * Very, very nice rooms

== Travel ==

San Francisco is served by three airports: Sacramento International (SMF), Oakland (OAK), and San Francisco International (SFO). We recommend San Francisco International Airport (SFO), as it is easily accessible to the city, and has numerous shuttles, taxis and car services that serve all of its terminals.  Your San Francisco hotel may be able to provide complimentary shuttle service to and from the airport. Car rentals are also available at the airport, with complimentary shuttle service to their rental facilities.
-Line 106:
+Line 103:
-== Travel ==

Information comming soon...
+For more information regarding San Francisco International Airport, including maps of its terminals,  visit their website: http://www.flysfo.com/ ''' '''



'''Transportation'''



A number of shuttle services provide transportation to and from the airport.  Any of the following agencies provide shuttle service that is easily accessible from any airport terminal, or hotel in San Francisco.



Public transportation, (Muni and BART), is easily accessible from the airport to anywhere within the city.

 * http://www.bart.gov/guide/airport/sfo.asp



'''A''''''irport Shuttles:'''



 * Super Shuttle Service:  http://www.supershuttle.com/htm/cities/sfo.htm

 * Additional links to other available private and public transportation and shuttles : http://www.sftravel.com/shutl.html

'''Taxi Services'''- From the airport, and within San Francisco: http://www.zpub.com/sf/zsf-taxi.html     *Fare from SFO to the city will range from $35-50 ''' '''



'''Public transportation services in San Francisco''', including fares, routes, and schedules: Transit 511 Weblink:  http://transit.511.org/index.asp ''' '''



''' UCSF Mission Bay Shuttle Service - Free Service'''! UCSF provides free shuttle service from to and from all of its campuses throughout San Francisco, and public transportation.  For more information and schedules, vist the weblink to the UCSF transportation website: http://www.campuslifeservices.ucsf.edu/transportation/shuttles/timetables/default.php
-Line 110:
+Line 123:
-Information comming soon...
+San Francisco boasts a rich multi-cultural history, and is a beautiful city with many local and area attractions that appeal to just about any type of traveler. While you are here, be sure to take in a few sights, and experience this unique city, or perhaps some of the beautiful attractions nearby, including Sausalito, Muir Woods, California wine country, or Alcatraz. Included below are some useful links to help you plan your visit to  many of the local attractions.  We hope you enjoy your visit to our great city!



 * http://onlyinsanfrancisco.com/   A full service guide and a good starting point for any visitor to San Francisco; includes restaurant listings, local events and links to tours and points of interest throughout the city.

 * http://www.buysanfranciscotours.com/   A useful link for checking into sightseeing and adventure  tours available within the city of San Francisco, including cable car and trolley tours, as well as tours to Alcatraz, Muir Woods, and beautiful California wine country.

 * http://www.sfcablecar.com/  Your guide for planning a ride on one of San Francisco's famed historic cable cars. Includes routes and rates.

 * http://www.sfzoo.org/        A link to our zoo, located within the San Francisco city limits.

 * http://www.sfmission.com/entertain/webguide.htm     A useful link for information and  links to museums in San Francisco, including the San Francisco Museum of Modern Art and the DeYoung Museum.

 * http://www.pier39.com/Media/MediaKit/profile.htm - official website for San Francisco's famous Pier 39 and Fisherman's Wharf - Famed Ghiradelli square is just steps away.

 * http://www.ghiradellisq.com  - Official website to this historic landmark, including its famous chocolate shop and specialty stores and restaurants.

Diff for "CytoscapeRetreat2006"