Differences between revisions 7 and 8

Hackathon discussion issues

GINY Refactoring

Edge IDs should be addressable, just like node IDs
We should ensure that all of Cytoscape currently assumes directed edges - how/when do we deal with undirected edges?
GINY metanode refactoring: remove meta methods - all functionality will be present in the metanode/group API. This will significantly simplify the GINY API and data structure allowing developers to be more confident that their algorithms will work on CyNetwork in general.
Refactor the GINY interface/inheritance architecture: e.g. should we encapsulate GINY in CyNetwork? See ["CyNode Identification"]
Clean up depracated methods
More Unit tests for giny to help us make these changes
Clean up Cytoscape class – duplicated methods in CyNetwork vs. Cytoscape class and the general bloat of the Cytoscape class.

What features should be in 3.0? There has been some brief discussion that the addition of metanode (group) and hyperedge concepts to the core (including some support for these in the UI) would qualify for 3.0 status.

-  ← Revision 7 as of 2006-08-19 12:25:55 →
  Size: 1004
  Editor: cosiapat1
  Comment:
+  ← Revision 8 as of 2006-08-20 14:57:13 →
  Size: 1249
  Editor: GaryBader
  Comment:
-Deletions are marked like this.
+Additions are marked like this.
 Line 17:
+== Uncategorized ==

 * What features should be in 3.0?  There has been some brief discussion that the addition of metanode (group) and hyperedge concepts to the core (including some support for these in the UI) would qualify for 3.0 status.