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A

ACTIVATION - Static variable in class cytoscape.editor.editors.MapBioMoleculeEditorToVisualStyle
 
ACTIVATION - Static variable in class cytoscape.editor.editors.SimpleBioMoleculeEditor
 
ANY_VISUAL_STYLE - Static variable in class cytoscape.editor.CytoscapeEditorManager
 
actionPerformed(ActionEvent) - Method in class cytoscape.editor.CytoscapeEditorPlugin.MainPluginAction
This method is called when the user selects the menu item.
actionPerformed(ActionEvent) - Method in class cytoscape.editor.actions.DeleteAction
delete all selected nodes and edges groups selected nodes and edges and then deletes both sets (nodes and edges) for deleted nodes, also collects and deletes the edges that are adjacent to the node
actionPerformed(ActionEvent) - Method in class cytoscape.editor.actions.NewNetworkAction
create the new network and assign a CytosapeEdtor note that an editor must be first initialized before a new network can be added and the editor assigned to it.
actionPerformed(ActionEvent) - Method in class cytoscape.editor.actions.RedoAction
method that is executed when the user performed an "redo delete" operation.
actionPerformed(ActionEvent) - Method in class cytoscape.editor.actions.UndoAction
method that is executed when the user performed an "undo delete" operation.
actionPerformed(ActionEvent) - Method in class cytoscape.editor.event.NetworkEditEventAdapter
actionPerformed() method should be overwritten by child classes
addEdge(Node, Node, String, Object, boolean, String) - Method in interface cytoscape.editor.CytoscapeEditor
wrapper for adding an edge in Cytoscape.
addEdge(Node, Node, String, Object) - Method in interface cytoscape.editor.CytoscapeEditor
wrapper for adding an edge in Cytoscape.
addEdge(Node, Node, String, Object, String) - Method in interface cytoscape.editor.CytoscapeEditor
wrapper for adding an edge in Cytoscape.
addEdge(Node, Node, String, Object, boolean) - Method in interface cytoscape.editor.CytoscapeEditor
wrapper for adding an edge in Cytoscape.
addEdge(Node, Node, String, Object, boolean, String) - Method in class cytoscape.editor.editors.BasicCytoscapeEditor
wrapper for adding an edge in Cytoscape.
addEdge(Node, Node, String, Object) - Method in class cytoscape.editor.editors.BasicCytoscapeEditor
wrapper for adding an edge in Cytoscape.
addEdge(Node, Node, String, Object, String) - Method in class cytoscape.editor.editors.BasicCytoscapeEditor
wrapper for adding an edge in Cytoscape.
addEdge(Node, Node, String, Object, boolean) - Method in class cytoscape.editor.editors.BasicCytoscapeEditor
wrapper for adding an edge in Cytoscape.
addEdgeContextMenuItems(EdgeView, JPopupMenu) - Method in class cytoscape.editor.editors.BasicCytoscapeEditor
 
addEdgeTypeForVisualStyle(VisualStyle, String) - Static method in class cytoscape.editor.CytoscapeEditorManager
adds an edge type to the mappings kept between visual style and its EDGE_TYPE attribute values
addEdit(UndoableEdit) - Static method in class cytoscape.editor.CytoscapeEditorManager
adds an undoable edit to the UndoManager.
addEditorType(String) - Method in interface cytoscape.editor.CytoscapeEditorFactory
adds an editor type to the collection of editor types
addEditorType(String) - Method in class cytoscape.editor.impl.CytoscapeEditorFactoryImpl
adds a new editorType to the collection of editor types
addHiddenEdgeForNetwork(CyNetwork, int) - Static method in class cytoscape.editor.CytoscapeEditorManager
adds an edge to the list of edges hidden from network
addHiddenNodeForNetwork(CyNetwork, int) - Static method in class cytoscape.editor.CytoscapeEditorManager
adds a node to the list of nodes hidden from network
addNode(String, String, String) - Method in interface cytoscape.editor.CytoscapeEditor
wrapper for adding a node in Cytoscape.
addNode(String, String, String, Point2D) - Method in interface cytoscape.editor.CytoscapeEditor
wrapper for adding a node in Cytoscape.
addNode(String, String) - Method in interface cytoscape.editor.CytoscapeEditor
wrapper for adding a node in Cytoscape.
addNode(String) - Method in interface cytoscape.editor.CytoscapeEditor
wrapper for adding a node in Cytoscape.
addNode(String, String, String, Point2D) - Method in class cytoscape.editor.editors.BasicCytoscapeEditor
wrapper for adding a node in Cytoscape.
addNode(String, String, String) - Method in class cytoscape.editor.editors.BasicCytoscapeEditor
wrapper for adding a node in Cytoscape.
addNode(String, String) - Method in class cytoscape.editor.editors.BasicCytoscapeEditor
wrapper for adding a node in Cytoscape.
addNode(String) - Method in class cytoscape.editor.editors.BasicCytoscapeEditor
wrapper for adding a node in Cytoscape.
addNodeContextMenuItems(NodeView, JPopupMenu) - Method in class cytoscape.editor.editors.BasicCytoscapeEditor
 
addShape(String, String, Icon, String) - Method in class cytoscape.editor.impl.ShapePalette
add a shape to the palette
allAttributeValuesRemoved(String, String) - Method in class cytoscape.editor.event.BasicNetworkEditEventHandler
 
allAttributeValuesRemoved(String, String) - Method in class cytoscape.editor.event.NetworkEditEventAdapter
 
attributeValueAssigned(String, String, Object[], Object, Object) - Method in class cytoscape.editor.event.BasicNetworkEditEventHandler
MultiHashMapListener methods
attributeValueAssigned(String, String, Object[], Object, Object) - Method in class cytoscape.editor.event.NetworkEditEventAdapter
MultiHashMapListener methods
attributeValueRemoved(String, String, Object[], Object) - Method in class cytoscape.editor.event.BasicNetworkEditEventHandler
 
attributeValueRemoved(String, String, Object[], Object) - Method in class cytoscape.editor.event.NetworkEditEventAdapter
 

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