A B C D E F G H I K M N O P R S U W

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ShapePalette - class cytoscape.editor.impl.ShapePalette.
The ShapePalette class implements a palette from which the user drags and drops shapes onto the canvas The dropping of shapes onto the canvas results in the addition of nodes and edges to the current Cytoscape network, as defined by the behavior of the event handler that responds to the drop events.
ShapePalette() - Constructor for class cytoscape.editor.impl.ShapePalette
 
SimpleBioMoleculeEditor - class cytoscape.editor.editors.SimpleBioMoleculeEditor.
An example editor that extends the basic Cytoscape editor and is based upon a drag-and-drop and palette framework into which developers plug in semantics.
SimpleBioMoleculeEditor() - Constructor for class cytoscape.editor.editors.SimpleBioMoleculeEditor
 
SimpleBioPAX_Editor - class cytoscape.editor.editors.SimpleBioPAX_Editor.
An example "BioPAX-like" editor that extends the basic Cytoscape editor and is based upon a drag-and-drop and palette framework into which developers plug in semantics.
SimpleBioPAX_Editor() - Constructor for class cytoscape.editor.editors.SimpleBioPAX_Editor
 
StringTransferHandler - class cytoscape.editor.impl.StringTransferHandler.
base class for the PaletteListTransferHandler of the ShapePalette taken from Java drag and drop tutorial, see http://java.sun.com/docs/books/tutorial/uiswing/misc/dnd.html
StringTransferHandler() - Constructor for class cytoscape.editor.impl.StringTransferHandler
 
setAttributeName(String) - Method in interface cytoscape.editor.GraphicalEntity
sets the name of the attribute associated with the Graphical Entity.
setAttributeName(String) - Method in class cytoscape.editor.impl.BasicCytoShapeEntity
 
setAttributeValue(String) - Method in interface cytoscape.editor.GraphicalEntity
sets the value of the attribute associated with the Graphical Entity.
setAttributeValue(String) - Method in class cytoscape.editor.impl.BasicCytoShapeEntity
 
setControllingEdgeAttribute(String) - Method in interface cytoscape.editor.CytoscapeEditor
 
setControllingEdgeAttribute(String) - Method in class cytoscape.editor.editors.BasicCytoscapeEditor
 
setControllingNodeAttribute(String) - Method in interface cytoscape.editor.CytoscapeEditor
 
setControllingNodeAttribute(String) - Method in class cytoscape.editor.editors.BasicCytoscapeEditor
 
setCurrentEditor(CytoscapeEditor) - Static method in class cytoscape.editor.CytoscapeEditorManager
 
setCurrentShapePalette(ShapePalette) - Static method in class cytoscape.editor.CytoscapeEditorManager
 
setDefaultBorderWidth(float) - Static method in class cytoscape.editor.CytoscapeEditorManager
sets the default node border width.
setDefaultEditor(CytoscapeEditor) - Static method in class cytoscape.editor.CytoscapeEditorManager
 
setEdgeAttributeName(String) - Method in class cytoscape.editor.event.BasicNetworkEditEventHandler
 
setEdgeAttributeValue(String) - Method in class cytoscape.editor.event.BasicNetworkEditEventHandler
 
setEdgeStarted(boolean) - Method in class cytoscape.editor.event.BasicNetworkEditEventHandler
set the flag that indicates whether an edge is under construction
setEditingEnabled(boolean) - Static method in class cytoscape.editor.CytoscapeEditorManager
 
setEditorForView(CyNetworkView, CytoscapeEditor) - Static method in class cytoscape.editor.CytoscapeEditorManager
set the editor for a CyNetworkView
setEditorName(String) - Method in interface cytoscape.editor.CytoscapeEditor
set the name of the editor.
setEditorName(String) - Method in class cytoscape.editor.editors.BasicCytoscapeEditor
sets the name (type) for this editor
setEventHandlerForView(CyNetworkView) - Static method in class cytoscape.editor.CytoscapeEditorManager
sets mapping of event handler to CyNetworkView.
setHandlingEdgeDrop(boolean) - Method in class cytoscape.editor.event.BasicNetworkEditEventHandler
 
setIcon(Icon) - Method in interface cytoscape.editor.GraphicalEntity
set the icon used on the palette to represent the graphical entity
setIcon(Icon) - Method in class cytoscape.editor.impl.BasicCytoShapeEntity
 
setMyDragSource(DragSource) - Method in interface cytoscape.editor.GraphicalEntity
defines the source of the drag operation, used when dragging a graphical entity from the palette onto the canvas
setMyDragSource(DragSource) - Method in class cytoscape.editor.impl.BasicCytoShapeEntity
 
setNetworkEditEventAdapter(NetworkEditEventAdapter) - Method in interface cytoscape.editor.CytoscapeEditor
 
setNetworkEditEventAdapter(NetworkEditEventAdapter) - Method in class cytoscape.editor.editors.BasicCytoscapeEditor
 
setNextPoint(Point2D) - Method in class cytoscape.editor.event.BasicNetworkEditEventHandler
 
setNode(NodeView) - Method in class cytoscape.editor.event.BasicNetworkEditEventHandler
 
setNodeAttributeName(String) - Method in class cytoscape.editor.event.BasicNetworkEditEventHandler
 
setNodeAttributeValue(String) - Method in class cytoscape.editor.event.BasicNetworkEditEventHandler
 
setRedoAction(RedoAction) - Method in class cytoscape.editor.actions.UndoAction
defines a redo action that corresponds with this UndoAction and is (or should be) the inverse of the functionality of the undo operation.
setRunningEditorFramework(boolean) - Static method in class cytoscape.editor.CytoscapeEditorManager
set the flag that indicates whether or not the editor framework is running.
setSettingUpEditor(boolean) - Static method in class cytoscape.editor.CytoscapeEditorManager
 
setShapePaletteForView(CyNetworkView, ShapePalette) - Static method in class cytoscape.editor.CytoscapeEditorManager
sets the ShapePalette that is associated with a CyNetworkView.
setStartPoint(Point2D) - Method in class cytoscape.editor.event.BasicNetworkEditEventHandler
 
setTitle(String) - Method in interface cytoscape.editor.GraphicalEntity
set the Title of the graphical entity
setTitle(String) - Method in class cytoscape.editor.impl.BasicCytoShapeEntity
 
setUndoAction(UndoAction) - Method in class cytoscape.editor.actions.RedoAction
defines an undo action that corresponds with this RedoAction and is (or should be) the inverse of the functionality of the redo operation.
setView(DGraphView) - Method in class cytoscape.editor.event.BasicNetworkEditEventHandler
 
setView(DGraphView) - Method in class cytoscape.editor.event.NetworkEditEventAdapter
 
setViewNetworkEditEventAdapter(CyNetworkView, NetworkEditEventAdapter) - Static method in class cytoscape.editor.CytoscapeEditorManager
set the adapter that handles drags/drops, other mouse events on the canvas.
set_args(Object[]) - Method in class cytoscape.editor.event.BasicCytoShapeTransferHandler
sets the _args instance variable
set_caller(CytoscapeEditor) - Method in class cytoscape.editor.event.BasicNetworkEditEventHandler
 
set_caller(CytoscapeEditor) - Method in class cytoscape.editor.event.NetworkEditEventAdapter
 
set_cytoShape(DragGestureListener) - Method in class cytoscape.editor.event.BasicCytoShapeTransferHandler
sets the instance variable for a BasicCytoShapeEntity
set_image(Image) - Method in interface cytoscape.editor.GraphicalEntity
set the image for the icon used on the palette to represent the graphical entity
set_image(Image) - Method in class cytoscape.editor.impl.BasicCytoShapeEntity
 
setupNewNetworkView(CyNetworkView) - Static method in class cytoscape.editor.CytoscapeEditorManager
Handles the logistics of setting up a New Network view.
setupUndoableAdditionEdit(CyNetwork, CyNode, CyEdge) - Method in class cytoscape.editor.impl.CytoscapeEditorManagerSupport
sets up the undo/redo operations for an Add of a node or edge
showPalette() - Method in class cytoscape.editor.impl.ShapePalette
show the palette in the WEST cytopanel
start(DGraphView) - Method in class cytoscape.editor.event.BasicNetworkEditEventHandler
starts up the event handler on the input network view adds an input event listener to the view's canvas
start(DGraphView) - Method in class cytoscape.editor.event.NetworkEditEventAdapter
starts up the event handler on the input network view adds an input event listener to the view's canvas
stateChanged(ChangeEvent) - Method in class cytoscape.editor.editors.DefaultCytoscapeEditor
redraw palette when a shape, color, or arrow mapping changes
stateChanged(ChangeEvent) - Method in class cytoscape.editor.impl.CytoscapeEditorManagerSupport
respond to a ChangeEvent, typically this is caused by switching visual styles
stop() - Method in class cytoscape.editor.event.BasicNetworkEditEventHandler
stops the event handler by removing the input event listener from the canvas this is called when the user switches between editors
stop() - Method in class cytoscape.editor.event.NetworkEditEventAdapter
stops the event handler by removing the input event listener from the canvas this is called when the user switches between editors

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