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    // get the node Cytoscape Data Instance     // get the node CytoscapeData Instance
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    // get the edge Cytoscape Data Instance     // get the edge CytoscapeData Instance

TableOfContents

This guide is intended to provide code examples for using CytoscapeData to access all of your information. Any questsions should be directed to cytoscape-discuss@googlegroups.com

1. Acessing Cytoscape Data

All attributes in Cytoscape are shared acrosss all CyNetworks. So there is only one global CytoscapeData instance for nodes and edges. These are available from the cytoscape.Cytoscape class.

   1 import cytoscape.Cytoscape;
   2 import cytoscape.data.CytoscapeData;
   3 
   4 public class MyDataClass {
   5 
   6   MyDataClass () {
   7 
   8     // get the node CytoscapeData Instance
   9     CytoscapeData node_data = Cytoscape.getNodeNetworkData();
  10 
  11     // get the edge CytoscapeData Instance
  12     CytoscapeData edge_data = Cytoscape.getEdgeNetworkData();
  13 }
  14 

CytoscapeData_Usage (last edited 2009-02-12 01:03:28 by localhost)

Funding for Cytoscape is provided by a federal grant from the U.S. National Institute of General Medical Sciences (NIGMS) of the Na tional Institutes of Health (NIH) under award number GM070743-01. Corporate funding is provided through a contract from Unilever PLC.

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