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| ~-''Outline and describe the process and major issues related to implementing this proposal. Illustrate your plan when possible. Try this free online tool for making diagrams -> [http://www.best4c.com/editor/NetMapApplication.jsp Best4c] (draw; save; then insert hyperlink into this page)''-~ | We are implementing the service interface in a phased manner. The database itself is being developed as a research project at the Gladstone Institutes. The first version of the Subgene''''''Viewer plugin will implement the data base a local resource, either filesystem-based or as an embedded database. This will migrate to a remote service interface. |
RFC Name : SubgeneViewer: Cytoscape from a Service Provider Perspective |
Editor(s): Alex Pico, Allan Kuchinsky |
Date: October 23, 2007 |
Status: Open for comment |
Proposal
We are building a visualization for splice variant information for genes. This is a modular implementation, comprising the viewer (client), the service, and the database. We anticipate that this work can be generalized to an API for others to be able to develop and provide services in Cytoscape. This generalization is dependent upon the re-layering of the Cytoscape architecture.
Background
A major new feature of Cytoscape version 2.6 is the BioWebServiceConnectivity interface, which allows Cytoscape plugin developers to write clients that connect to web services. From a different perspective, we are developing a plugin that will have both client and service components, and an underlying database that will be accessed via the service.
Use Cases
Provide examples of how the products of this project will be used.
Implementation Plan
We are implementing the service interface in a phased manner. The database itself is being developed as a research project at the Gladstone Institutes. The first version of the SubgeneViewer plugin will implement the data base a local resource, either filesystem-based or as an embedded database. This will migrate to a remote service interface.
Project Management
Project Timeline
Provide a timeline for implementation. Insert a graphic if you can. Try this free online tool for making project timelines -> [http://www.helpuplan.com/index.asp Help-u-Plan] (create a new chart; modify; right-click to save gif; then attach to this page)
Tasks and Milestones
Outline the major milestones and tasks involved in implementation.
Milestone 1: …
- Task 1: ...
- Task 2: ...
Milestone 2: …
Project Dependencies
Outline and projects that depend on this project, link to relevant RFC's and note at what point dependent projects could be started.
Related RFCs
Link to other related RFCs
Issues
List any issues, conflict, or dependencies raised by this proposal
Comments
Add comment here…
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