Community Structure Layout

Gang Su

sugang@umich.edu attachment:CLogo.png

Bioinformatics Program, University of Michigan, Ann Arbor

Biological Use Case: This plugin is aimed to find community structures in large biological networks, which may infer protein complexes and biological pathways. We also utilize the community structure information to improve visualization of large interaction networks.

Recipe

Cytoscape version: Version number (2.6.1)

Plugins to Load: attachment:GLay.jar , MetaNodePlugin2.jar

Plugins to Load: attachment:GLay.jar , attachment:MetaNodePlugin2.jar

GUI steps:

Here's a miniposter for FYI

And abstract FYI

Data / Session Files: Attach (preferably) a session file or else the data files used in the workflow

Presentation: attachment:Presentation.ppt

Webstart: Attach a webstart

Video: Video Tutorial: http://www.youtube.com/watch?v=W79Kb28348g, http://www.youtube.com/watch?v=OD3fUF62Gd8 ; High resolution video tutorial: attachment:GangScreen.wmv

Funding for Cytoscape is provided by a federal grant from the U.S. National Institute of General Medical Sciences (NIGMS) of the Na tional Institutes of Health (NIH) under award number GM070743-01. Corporate funding is provided through a contract from Unilever PLC.

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