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= Community Structure Layout =
'''Gang Su'''

''Bioinformatics Program, University of Michigan, Ann Arbor''

'''__Biological Use Case__''': This plugin is aimed to find community structures in large biological networks, which may infer protein complexes and biological pathways. We also utilize the community structure information to improve visualization of large interaction networks.

'''__Recipe__'''

''__Cytoscape version__'': Version number (2.6.1)

''__Plugins to Load__'': attachment:GLay.jar, MetaNodePlugin2.jar

''__Plugins to Load__'': attachment:GLay.jar, attachment:MetaNodePlugin2.jar

''__GUI steps__'':

Describe each step (story), the GUI action to take, and probable remarks
|| ''Story'' || ''Action'' || ''Remarks'' ||
||attachment:screen1.jpg || || ||
||attachment:screen2.jpg || || ||
||attachment:screen3.jpg || || ||
||attachment:screen4.jpg || || ||
||attachment:screen5.jpg || || ||

Here's a miniposter for FYI
attachment:GLayMiniPoster.jpg

'''__Data / Session Files__''': Attach (preferably) a session file or else the data files used in the workflow

'''__Presentation__''': attachment:Presentation.ppt

'''__Webstart__''': Attach a webstart

'''__Video__''': Video Tutorial: http://www.youtube.com/watch?v=W79Kb28348g, http://www.youtube.com/watch?v=OD3fUF62Gd8

CommunityStructureLayout (last edited 2009-02-12 01:03:19 by localhost)

Funding for Cytoscape is provided by a federal grant from the U.S. National Institute of General Medical Sciences (NIGMS) of the Na tional Institutes of Health (NIH) under award number GM070743-01. Corporate funding is provided through a contract from Unilever PLC.

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