Cytoscape Wiki|
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| '''__Biological Use Case__''': Describe a real biological problem. | '''__Biological Use Case__''': This plugin is aimed to find community structures in large biological networks, which may infer protein complexes and biological pathways. We also utilize the community structure information to improve visualization of large interaction networks. |
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Community Structure Layout
Gang Su
Bioinformatics Program, University of Michigan, Ann Arbor
Biological Use Case: This plugin is aimed to find community structures in large biological networks, which may infer protein complexes and biological pathways. We also utilize the community structure information to improve visualization of large interaction networks.
Recipe
Cytoscape version: Version number (2.6.1)
Plugins to Load: attachment:GLay.jar, MetaNodePlugin2.jar
Plugins to Load: attachment:GLay.jar, attachment:MetaNodePlugin2.jar
GUI steps:
Describe each step (story), the GUI action to take, and probable remarks
Story |
Action |
Remarks |
attachment:screen1.jpg |
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attachment:screen2.jpg |
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attachment:screen3.jpg |
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attachment:screen4.jpg |
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attachment:screen5.jpg |
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Data / Session Files: Attach (preferably) a session file or else the data files used in the workflow
Presentation: attachment:Presentation.ppt
Webstart: Attach a webstart
Video: Video Tutorial: http://www.youtube.com/watch?v=W79Kb28348g, http://www.youtube.com/watch?v=OD3fUF62Gd8