Cytoscape Wiki|
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sugang@umich.edu attachment:CLogo.png |
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| '''__Biological Use Case__''': Describe a real biological problem. | '''__Biological Use Case__''': This plugin is aimed to find community structures in large biological networks, which may infer protein complexes and biological pathways. We also utilize the community structure information to improve visualization of large interaction networks. |
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| ''__Plugins to Load__'': attachment:GLay.jar , MetaNodePlugin2.jar | |
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---- /!\ '''Edit conflict - other version:''' ---- ''__Plugins to Load__'': attachment:GLay.jar, MetaNodePlugin2.jar ---- /!\ '''Edit conflict - your version:''' ---- ''__Plugins to Load__'': attachment:GLay.jar, attachment:MetaNodePlugin2.jar ---- /!\ '''End of edit conflict''' ---- |
''__Plugins to Load__'': attachment:GLay.jar , attachment:MetaNodePlugin2.jar |
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Describe each step (story), the GUI action to take, and probable remarks || ''Story'' || ''Action'' || ''Remarks'' || |
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---- /!\ '''Edit conflict - other version:''' ---- ||attachment:screen1.jpg || || || ||attachment:screen2.jpg || || || ||attachment:screen3.jpg || || || ||attachment:screen4.jpg || || || ||attachment:screen5.jpg || || || |
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---- /!\ '''Edit conflict - your version:''' ---- ||attachment:screen1.jpg || || || ||attachment:screen2.jpg || || || ||attachment:screen3.jpg || || || ||attachment:screen4.jpg || || || ||attachment:screen5.jpg || || || |
Here's a miniposter for FYI |
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| ---- /!\ '''End of edit conflict''' ---- |
. attachment:GLayMiniPoster.jpg And abstract FYI |
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| . attachment:GLayAbstract.pdf | |
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| '''__Video__''': Video Tutorial: http://www.youtube.com/watch?v=W79Kb28348g, http://www.youtube.com/watch?v=OD3fUF62Gd8 | '''__Video__''': Video Tutorial: http://www.youtube.com/watch?v=W79Kb28348g, http://www.youtube.com/watch?v=OD3fUF62Gd8 ; High resolution video tutorial: attachment:GangScreen.wmv |
Community Structure Layout
Gang Su
sugang@umich.edu attachment:CLogo.png
Bioinformatics Program, University of Michigan, Ann Arbor
Biological Use Case: This plugin is aimed to find community structures in large biological networks, which may infer protein complexes and biological pathways. We also utilize the community structure information to improve visualization of large interaction networks.
Recipe
Cytoscape version: Version number (2.6.1)
Plugins to Load: attachment:GLay.jar , MetaNodePlugin2.jar
Plugins to Load: attachment:GLay.jar , attachment:MetaNodePlugin2.jar
GUI steps:
Here's a miniposter for FYI
- attachment:GLayMiniPoster.jpg
And abstract FYI
- attachment:GLayAbstract.pdf
Data / Session Files: Attach (preferably) a session file or else the data files used in the workflow
Presentation: attachment:Presentation.ppt
Webstart: Attach a webstart
Video: Video Tutorial: http://www.youtube.com/watch?v=W79Kb28348g, http://www.youtube.com/watch?v=OD3fUF62Gd8 ; High resolution video tutorial: attachment:GangScreen.wmv