Differences between revisions 4 and 5

ClusterMaker

John 'Scooter' Morris

University of California, San Francisco

Biological Use Case: Find possible complexes, protein families, functional relationships and view in biological context.

Recipe

Cytoscape version: Version number (2.6)

Plugins to Load: ClusterMaker (from what URL?)

GUI steps:

Describe each step (story), the GUI action to take, and probable remarks

Story	Action	Remarks
Start with expression data for studies into mechanism for galactose utilization	open galfiltered.cys session
run clustering to determine interesting subnets	select plugins -> cluster -> hierarchical cluster. For settings, use maximal linkage, cluster attributes as well as nodes, cluster on just expression data

Data Files: Attach data files

Presentation: Attach your presentation

Webstart: Attach a webstart

Video: Attach a video link

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+  ← Revision 5 as of 2008-08-13 18:25:54 →
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+||Start with expression data for studies into mechanism for galactose utilization || open galfiltered.cys session|| ||

||run clustering to determine interesting subnets || select plugins -> cluster -> hierarchical cluster.  For settings, use maximal linkage, cluster attributes as well as nodes, cluster on just expression data || ||

Diff for "ClusterMakerRecipe"