Cytoscape Wiki|
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| ''__Plugins to Load__'': Plugins and urls | ''__Plugins to Load__'': ClusterMaker (from what URL?) |
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||Start with expression data for studies into mechanism for galactose utilization || open galfiltered.cys session|| || ||run clustering to determine interesting subnets || select plugins -> cluster -> hierarchical cluster. For settings, use maximal linkage, cluster attributes as well as nodes, cluster on just expression data || || || || || || || || || || || || || || || || || || || || || || || || || || |
ClusterMaker
John 'Scooter' Morris
University of California, San Francisco
Biological Use Case: Find possible complexes, protein families, functional relationships and view in biological context.
Recipe
Cytoscape version: Version number (2.6)
Plugins to Load: ClusterMaker (from what URL?)
GUI steps:
Describe each step (story), the GUI action to take, and probable remarks
Story |
Action |
Remarks |
Start with expression data for studies into mechanism for galactose utilization |
open galfiltered.cys session |
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run clustering to determine interesting subnets |
select plugins -> cluster -> hierarchical cluster. For settings, use maximal linkage, cluster attributes as well as nodes, cluster on just expression data |
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