Cytoscape Wiki|
← Revision 1 as of 2008-08-13 18:06:46 →
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= Your Title = '''Your name ''' |
= ClusterMaker = '''John 'Scooter' Morris ''' |
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| ''Your institute'' | ''University of California, San Francisco'' |
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| '''__Biological Use Case__''': Describe a real biological problem. | '''__Biological Use Case__''': Find possible complexes, protein families, functional relationships and view in biological context. |
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| ''__Cytoscape version__'': Version number (2.6) | ''__Cytoscape version__'': Version number (2.6) |
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| ''__Plugins to Load__'': Plugins and urls | ''__Plugins to Load__'': ClusterMaker (from what URL?) |
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| ''__GUI steps__'': | ''__GUI steps__'': |
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|| ''Story'' || ''Action'' || ''Remarks'' || || || || || |
||''Story'' ||''Action'' ||''Remarks'' || ||Start with expression data for studies into mechanism for galactose utilization || open galfiltered.cys session|| || ||run clustering to determine interesting subnets || select plugins -> cluster -> hierarchical cluster. For settings, use maximal linkage, cluster attributes as well as nodes, cluster on just expression data || || || || || || || || || || || || || || || || || || || || || || || || || || || || || || |
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| '''__Presentation__''': Attach your presentation | '''__Presentation__''': Attach your presentation |
ClusterMaker
John 'Scooter' Morris
University of California, San Francisco
Biological Use Case: Find possible complexes, protein families, functional relationships and view in biological context.
Recipe
Cytoscape version: Version number (2.6)
Plugins to Load: ClusterMaker (from what URL?)
GUI steps:
Describe each step (story), the GUI action to take, and probable remarks
Story |
Action |
Remarks |
Start with expression data for studies into mechanism for galactose utilization |
open galfiltered.cys session |
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run clustering to determine interesting subnets |
select plugins -> cluster -> hierarchical cluster. For settings, use maximal linkage, cluster attributes as well as nodes, cluster on just expression data |
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Data Files: Attach data files
Presentation: Attach your presentation
Webstart: Attach a webstart
Video: Attach a video link