Diff for "BubbleRouterRFC"

TableOfContents([2])

About this document

This is an official Request for Comment (RFC) for feedback and critique of the new Bubble Router plugin.

For details on RFCs in general, check out the [http://www.answers.com/main/ntquery?method=4&dsid=2222&dekey=Request+for+Comments&gwp=8&curtab=2222_1&linktext=Request%20for%20Comments Wikipedia Entry: Request for Comments (RFCs)]

Status

Under Construction

How to Comment

To view/add comments, click on any of 'Comment' links below. By adding your ideas to the Wiki directly, we can more easily organize everyone's ideas, and keep clear records. Be sure to include today's date and your name for each comment. Here is an example to get things started: ["/Comment"].

Biological Questions / Use Cases

You have a network or list of genes from an array study or literature search and you want to organize and layout the nodes in a biologically meaningful way. Instead of using the current layout algorithms that rely on network-based parameters, the Bubble Router plugin provides an interactive layout experience. You can draw rectangular regions anywhere on the canvas and then route nodes to the region by selecting an attribute and value from the available node attributes. You can also load and reference species-specific cellular component attributes that we've prepared and will distribute with the plugin, allowing layouts based on a compact set of cell compartments such as Nucleus, Cytoplasm, Extracellular, Plasma Membrane, etc.

Demo

View [http://chianti.ucsd.edu/~mes/BubbleRouterTest.mov this demo video] to see how it work! (Can you name that voice?)

Instructions

Coming soon...

Comments

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