Cytoscape Wiki
Agilent Literature Search Recipe
Allan Kuchinsky
Agilent Technologies
Biological Use Case: Generate biological networks by extracting associations from scientific literature and other unstructured text. This demonstration is associated with a study into cardiovascular disease, in which the interpretation of microarray data is augmented by generating biological networks for a list of highly regulated genes.
Recipe
Cytoscape version: Version number (2.6)
Plugins to Load: Plugins and urls
GUI steps:
Describe each step (story), the GUI action to take, and probable remarks
Story |
Action |
Remarks |
generate biological network for a list of genes |
Bring up Agilent Literature Search plugin via Plugins menu. |
|
|
click on 'Use Aliases' in Search Controls |
|
Data / Session Files: Attach (preferably) a session file or else the data files used in the workflow
Presentation: Attach your presentation
Webstart: Attach a webstart
Video: Attach a video link