Differences between revisions 3 and 4

Agilent Literature Search Recipe

Allan Kuchinsky

Agilent Technologies

Biological Use Case: Generate biological networks by extracting associations from scientific literature and other unstructured text. This demonstration is associated with a study into cardiovascular disease, in which the interpretation of microarray data is augmented by generating biological networks for a list of highly regulated genes.

Recipe

Cytoscape version: Version number (2.6)

Plugins to Load: Plugins and urls

GUI steps:

Describe each step (story), the GUI action to take, and probable remarks

Story	Action	Remarks
generate biological network for a list of genes	Bring up Agilent Literature Search plugin via Plugins menu.
	click on 'Use Aliases' in Search Controls

Data / Session Files: Attach (preferably) a session file or else the data files used in the workflow

Presentation: Attach your presentation

Webstart: Attach a webstart

Video: Attach a video link

-  ← Revision 3 as of 2008-08-16 22:31:42 →
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+  ← Revision 4 as of 2008-08-16 22:38:49 →
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  Editor: cosiapat1
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-||generate biological network for a list of genes  || type a list of gene names into the ''terms'' area.  For this example, use cancer-re;at ||  ||
+||generate biological network for a list of genes  || Bring up Agilent Literature Search plugin via Plugins menu.||  ||

||  || click on 'Use Aliases' in Search Controls||  ||

Diff for "AgilentLiteratureSearchRecipe"

Agilent Literature Search Recipe