Diff for "API" - Cytoscape Wiki

Differences between revisions 5 and 6

To give you a better idea of how the interfaces work together, here is an example:

Example 1. Algorithm calculated groups:

CyNetwork [] groups = someAlgorithm.calculateGroups(someArgs); groupManager.addGroupsToNetwork(myNetwork); {{{GroupingStrategy collapsingStrategy = GroupingStrategyFactory.createGroupingStrategy(GroupingStrategyFactory.COLLAPSING_STRATEGY); GroupingStrategy stackingStrategy = GrouupingStrategyFactory.createGroupingStrategy(GroupingStrategyFactory.STACKING_STRATEGY);}}} for(int i = 0; i < groups.length; i++){

if(groups[i].nodeCount() > SOME_LIMIT){
- collapsingStrategy.group(myNetwork,groups[i]); // this collapses the groups
}else{
- stackingStrategy.group(myNetwork,groups[i]); // this aligns the nodes in a stack
}

}

-  ← Revision 5 as of 2006-02-28 02:04:27 →
  Size: 879
  Editor: pix39
  Comment:
+  ← Revision 6 as of 2006-02-28 02:05:03 →
  Size: 891
  Editor: pix39
  Comment:
-Deletions are marked like this.
+Additions are marked like this.
 Line 8:
-groupManager.addGroupsToNetwork(myNetwork);

GroupingStrategy collapsingStrategy = GroupingStrategyFactory.createGroupingStrategy(GroupingStrategyFactory.COLLAPSING_STRATEGY);

GroupingStrategy stackingStrategy = GrouupingStrategyFactory.createGroupingStrategy(GroupingStrategyFactory.STACKING_STRATEGY);
+{{{groupManager.addGroupsToNetwork(myNetwork);}}}

{{{GroupingStrategy collapsingStrategy = GroupingStrategyFactory.createGroupingStrategy(GroupingStrategyFactory.COLLAPSING_STRATEGY);

GroupingStrategy stackingStrategy = GrouupingStrategyFactory.createGroupingStrategy(GroupingStrategyFactory.STACKING_STRATEGY);}}}