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← Revision 4 as of 2006-02-28 02:04:09
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← Revision 5 as of 2006-02-28 02:04:27 →
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| Deletions are marked like this. | Additions are marked like this. |
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| {{{CyNetwork}}} [] groups = someAlgorithm.calculateGroups(someArgs); | {{{CyNetwork [] groups = someAlgorithm.calculateGroups(someArgs);}}} |
Please review the Java-Docs at http://db.systemsbiology.net/cytoscape/grouping/doc/ and comment.
To give you a better idea of how the interfaces work together, here is an example:
Example 1. Algorithm calculated groups:
CyNetwork [] groups = someAlgorithm.calculateGroups(someArgs); groupManager.addGroupsToNetwork(myNetwork); GroupingStrategy collapsingStrategy = GroupingStrategyFactory.createGroupingStrategy(GroupingStrategyFactory.COLLAPSING_STRATEGY); GroupingStrategy stackingStrategy = GrouupingStrategyFactory.createGroupingStrategy(GroupingStrategyFactory.STACKING_STRATEGY); for(int i = 0; i < groups.length; i++){
if(groups[i].nodeCount() > SOME_LIMIT){
- collapsingStrategy.group(myNetwork,groups[i]); // this collapses the groups
- stackingStrategy.group(myNetwork,groups[i]); // this aligns the nodes in a stack
}