Diff for "API" - Cytoscape Wiki

Differences between revisions 1 and 3 (spanning 2 versions)

To give you a better idea of how the interfaces work together, here is an example:

Example 1. Algorithm calculated groups:

CyNetwork [] groups = someAlgorithm.calculateGroups(someArgs); groupManager.addGroupsToNetwork(myNetwork); GroupingStrategy collapsingStrategy = GroupingStrategyFactory.createGroupingStrategy(GroupingStrategyFactory.COLLAPSING_STRATEGY); GroupingStrategy stackingStrategy = GrouupingStrategyFactory.createGroupingStrategy(GroupingStrategyFactory.STACKING_STRATEGY); for(int i = 0; i < groups.length; i++){

if(groups[i].nodeCount() > SOME_LIMIT){
- collapsingStrategy.group(myNetwork,groups[i]); // this collapses the groups
}else{
- stackingStrategy.group(myNetwork,groups[i]); // this aligns the nodes in a stack
}

}

-  ← Revision 1 as of 2006-02-28 01:50:02 →
  Size: 101
  Editor: pix39
  Comment:
+  ← Revision 3 as of 2006-02-28 02:00:37 →
  Size: 873
  Editor: pix39
  Comment:
-Deletions are marked like this.
+Additions are marked like this.
 Line 1:
-Please review the JavaDocs at ["http://db.systemsbiology.net/cytoscape/grouping/doc/"] and comment.
+Please review the Java-Docs at http://db.systemsbiology.net/cytoscape/grouping/doc/ and comment.



To give you a better idea of how the interfaces work together, here is an example:



Example 1. Algorithm calculated groups:



CyNetwork [] groups = someAlgorithm.calculateGroups(someArgs);

groupManager.addGroupsToNetwork(myNetwork);

GroupingStrategy collapsingStrategy = GroupingStrategyFactory.createGroupingStrategy(GroupingStrategyFactory.COLLAPSING_STRATEGY);

GroupingStrategy stackingStrategy = GrouupingStrategyFactory.createGroupingStrategy(GroupingStrategyFactory.STACKING_STRATEGY);

for(int i = 0; i < groups.length; i++){

   if(groups[i].nodeCount() > SOME_LIMIT){

    collapsingStrategy.group(myNetwork,groups[i]); // this collapses the groups

   }else{

    stackingStrategy.group(myNetwork,groups[i]); // this aligns the nodes in a stack

   }



}